C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177156 Meis3-005 ENSMUSG00000041420 10090 + 7:16175430-16186504 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaENSMUST00000177156
Transcript ID Liver Placenta
ENSMUST00000177156 0.065±0.02 1.583±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051897 IMP positive regulation of protein kinase B signaling
GO:2001234 IMP negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129114 protein_coding Danio_rerio 1e-33 148
ENST00000331559 MEIS3-001 protein_coding Homo_sapiens 0 449
ENST00000418141 MEIS3P2-001 processed_pseudogene Homo_sapiens 0 617
ENST00000441740 MEIS3-002 protein_coding Homo_sapiens 0 756
ENST00000495167 MEIS3P1-001 processed_pseudogene Homo_sapiens 0 549
ENST00000557833 MEIS3-013 protein_coding Homo_sapiens 0 446
ENST00000558555 MEIS3-005 protein_coding Homo_sapiens 0 1271
ENST00000559338 MEIS3-014 protein_coding Homo_sapiens 0 446
ENST00000559524 MEIS3-003 protein_coding Homo_sapiens 0 979
ENST00000560245 MEIS3-008 protein_coding Homo_sapiens 0 848
ENST00000560253 MEIS3-012 processed_transcript Homo_sapiens 0 468
ENST00000561096 MEIS3-011 protein_coding Homo_sapiens 0 1264
ENST00000561204 MEIS3-009 retained_intron Homo_sapiens 0 1264
ENST00000561293 MEIS3-007 protein_coding Homo_sapiens 0 979

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