C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028639 Meis2-011 ENSMUSG00000027210 10090 - 2:115863064-116065047 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartLiverLungMusclePlacentaTestisENSMUST00000028639
Transcript ID Adipose Adrenal Colon Heart Liver Lung Muscle Placenta Testis
ENSMUST00000028639 5.665±0.00 20.774±3.40 0.785±0.12 1.184±0.00 0.371±0.10 1.154±0.00 0.006±0.00 0.999±0.00 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MM CIL_0007MM_0002 UCNEbase 2:114412124-116821493
CIL_00088L CIL_00088L_0002 VISTA 2:115356958-115958248
CIL_0008GX CIL_0008GX_0002 VISTA 2:115358281-115959712
CIL_00084J CIL_00084J_0002 VISTA 2:115369514-115969885
CIL_00087U CIL_00087U_0002 VISTA 2:115567988-116170503
CIL_0008KD CIL_0008KD_0002 VISTA 2:115571243-116172482
CIL_0006QS CIL_0006QS_0002 CGP 2:115581716-116065839
CIL_0008O9 CIL_0008O9_0002 VISTA 2:115596429-116199400
CIL_0008M1 CIL_0008M1_0002 VISTA 2:115619997-116221651
CIL_00096Q CIL_00096Q_0002 VISTA 2:115662485-116263540
CIL_0009D1 CIL_0009D1_0002 VISTA 2:115718048-116320475
CIL_00086F CIL_00086F_0002 VISTA 2:115744886-116346285
CIL_0006QR CIL_0006QR_0002 CGP 2:115863064-116892494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001654 IGI eye development
GO:0003677 IDA DNA binding
GO:0003712 IDA transcription cofactor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IDA transcription factor binding
GO:0009612 IEA response to mechanical stimulus
GO:0031016 IEA pancreas development
GO:0043565 IGI sequence-specific DNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070848 IEA response to growth factor

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129114 protein_coding Danio_rerio 0 429
ENST00000314177 MEIS2-012 nonsense_mediated_decay Homo_sapiens 0 2002
ENST00000338564 MEIS2-002 protein_coding Homo_sapiens 0 3932
ENST00000340545 MEIS2-201 protein_coding Homo_sapiens 0 2100
ENST00000397620 MEIS2-005 protein_coding Homo_sapiens 0 1489
ENST00000397624 MEIS2-007 protein_coding Homo_sapiens 0 2102
ENST00000424352 MEIS2-003 protein_coding Homo_sapiens 0 2095
ENST00000557796 MEIS2-017 protein_coding Homo_sapiens 0 1631
ENST00000557992 MEIS2-026 retained_intron Homo_sapiens 0 207
ENST00000558313 MEIS2-018 protein_coding Homo_sapiens 0 987
ENST00000558643 MEIS2-022 retained_intron Homo_sapiens 0 302
ENST00000559085 MEIS2-008 protein_coding Homo_sapiens 0 1768
ENST00000559371 MEIS2-027 retained_intron Homo_sapiens 2e-38 163
ENST00000559408 MEIS2-023 processed_transcript Homo_sapiens 3e-40 169
ENST00000559561 MEIS2-028 protein_coding Homo_sapiens 0 1960
ENST00000559972 MEIS2-020 retained_intron Homo_sapiens 0 894
ENST00000560570 MEIS2-009 nonsense_mediated_decay Homo_sapiens 0 1724
ENST00000560617 MEIS2-015 protein_coding Homo_sapiens 0 787
ENST00000560697 MEIS2-021 protein_coding Homo_sapiens 0 732
ENST00000560702 MEIS2-016 retained_intron Homo_sapiens 0 2246
ENST00000561163 MEIS2-006 retained_intron Homo_sapiens 0 1365
ENST00000561208 MEIS2-001 protein_coding Homo_sapiens 0 4196
ENST00000561264 MEIS2-024 retained_intron Homo_sapiens 0 571
ENST00000561284 MEIS2-025 retained_intron Homo_sapiens 0 418
ENST00000561422 MEIS2-013 retained_intron Homo_sapiens 0 396
ENST00000606653 MEIS2-031 protein_coding Homo_sapiens 0 451
ENST00000607277 MEIS2-030 protein_coding Homo_sapiens 0 941

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