C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000129561 atp2a1-002 ENSDARG00000020574 7955 - 3:26878041-26890073 protein_coding

Danio rerio EnsemblZv9

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000129561
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000129561 0.388±0.17 0.721±0.50 15.374±2.27 0.063±0.00 26.809±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000557 CIL_000557_0001 CGP 3:26863439-26953764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005509 ISS calcium ion binding
GO:0005524 ISS ATP binding
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0006200 ISS ATP catabolic process
GO:0006812 IEA cation transport
GO:0006816 IEA calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006937 IMP regulation of muscle contraction
GO:0006942 ISS regulation of striated muscle contraction
GO:0009612 IMP response to mechanical stimulus
GO:0016020 ISS membrane
GO:0016021 IEA integral to membrane
GO:0016529 ISS sarcoplasmic reticulum
GO:0016787 IEA hydrolase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0031448 ISS positive regulation of fast-twitch skeletal muscle fiber contraction
GO:0031673 ISS H zone
GO:0031674 ISS I band
GO:0045932 IMP negative regulation of muscle contraction
GO:0045988 ISS negative regulation of striated muscle contraction
GO:0046872 IEA metal ion binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0070588 ISS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032974 Atp2a1-001 protein_coding Mus_musculus 0 1738
ENST00000357084 ATP2A1-001 protein_coding Homo_sapiens 0 1943
ENST00000395503 ATP2A1-002 protein_coding Homo_sapiens 0 1943
ENST00000536376 ATP2A1-003 protein_coding Homo_sapiens 0 1844

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