C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 3a, tandem duplicate 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000131232 cntn3a.2-001 ENSDARG00000013647 7955 - 23:11120921-11234829 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000131232
Transcript ID Brain Heart Kidney Liver
ENSDART00000131232 0.159±0.10 0.564±0.00 0.716±0.60 0.014±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397459 CNTN4-002 protein_coding Homo_sapiens 0.0000000004 71
ENST00000397461 CNTN4-001 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000418658 CNTN4-009 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000427331 CNTN4-201 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000427741 CNTN4-003 nonsense_mediated_decay Homo_sapiens 0.0000000006 71
ENST00000430505 CNTN4-010 retained_intron Homo_sapiens 0.00000000000006 84
ENST00000438282 CNTN4-006 retained_intron Homo_sapiens 0.00000000000006 84
ENST00000473845 CNTN4-015 protein_coding Homo_sapiens 0.0000000001 71
ENST00000475817 CNTN4-017 processed_transcript Homo_sapiens 0.0000000001 71

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