C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397459 CNTN4-002 ENSG00000144619 9606 + 3:2892215-3056355 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000397459
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000397459 0.280±0.00 0.826±0.00 1.982±0.00 0.795±0.00 0.272±0.03 0.661±0.00 0.502±0.00 0.211±0.00 0.250±0.10 0.614±0.17 10.979±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050H CIL_00050H_0001 CGP 3:1092576-3057956
CIL_0007CD CIL_0007CD_0001 CGP 3:2098813-3126613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 NAS plasma membrane
GO:0007158 TAS neuron cell-cell adhesion
GO:0007399 IMP nervous system development
GO:0007409 TAS axonogenesis
GO:0007411 TAS axon guidance
GO:0007413 TAS axonal fasciculation
GO:0007420 ISS brain development
GO:0030424 NAS axon
GO:0031175 ISS neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0045665 IMP negative regulation of neuron differentiation
GO:0048167 TAS regulation of synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132395 Cntn4-008 processed_transcript Mus_musculus 0 3062
ENSMUST00000113264 Cntn4-201 protein_coding Mus_musculus 0 3059
ENSMUST00000089208 Cntn4-001 protein_coding Mus_musculus 0 3059
ENSMUST00000113260 Cntn4-007 protein_coding Mus_musculus 0 1495
ENSMUST00000079416 Cntn4-006 protein_coding Mus_musculus 0 1495
ENSMUST00000113261 Cntn4-004 protein_coding Mus_musculus 0 1495
ENSMUST00000113258 Cntn4-005 protein_coding Mus_musculus 0 697
ENSMUST00000142626 Cntn4-011 processed_transcript Mus_musculus 0 580
ENSMUST00000123596 Cntn4-010 retained_intron Mus_musculus 0 392
ENSMUST00000125904 Cntn4-002 processed_transcript Mus_musculus 0 353
ENSDART00000104954 cntn3a.2-201 protein_coding Danio_rerio 0.0000000004 71
ENSDART00000131232 cntn3a.2-001 protein_coding Danio_rerio 0.0000000004 71

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