C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold shock domain containing E1, RNA-binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000134542 csde1-001 ENSDARG00000074758 7955 - 8:23129314-23150130 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000134542
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000134542 7.131±1.54 20.659±4.91 18.869±0.00 3.966±0.00 7.612±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0006355 IEA regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029446 Csde1-201 protein_coding Mus_musculus 0.000000000000002 90
ENST00000339438 CSDE1-001 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000358528 CSDE1-002 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000369530 CSDE1-004 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000438362 CSDE1-008 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000524652 CSDE1-011 processed_transcript Homo_sapiens 3e-16 90
ENST00000525132 CSDE1-015 protein_coding Homo_sapiens 2e-16 90
ENST00000525878 CSDE1-010 protein_coding Homo_sapiens 3e-16 90
ENST00000525970 CSDE1-013 protein_coding Homo_sapiens 2e-16 90
ENST00000530886 CSDE1-007 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000533818 CSDE1-012 processed_transcript Homo_sapiens 3e-16 90
ENST00000610726 CSDE1-201 protein_coding Homo_sapiens 0.000000000000002 90

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