C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold shock domain containing E1, RNA-binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339438 CSDE1-001 ENSG00000009307 9606 - 1:114716913-114757983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339438 108.651±0.00 74.287±0.00 7.458±0.00 45.250±15.04 95.786±72.99 78.424±59.21 55.736±0.00 44.557±15.04 35.758±10.13 57.484±26.59 78.699±50.94 43.292±26.59 43.796±8.12 88.919±39.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008584 TAS male gonad development
GO:0044822 IDA poly(A) RNA binding
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0070966 IMP nuclear-transcribed mRNA catabolic process, no-go decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029446 Csde1-201 protein_coding Mus_musculus 0 4508
ENSDART00000132680 csde1-002 processed_transcript Danio_rerio 0.000000000000002 90
ENSDART00000134542 csde1-001 protein_coding Danio_rerio 0.000000000000002 90

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