C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000136361 sema6d-001 ENSDARG00000002748 7955 + 19:400160-427243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000136361
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000136361 0.732±0.43 5.740±3.55 3.242±2.26 0.277±0.00 1.257±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000581 CIL_000581_0002 CGP 19:383673-427243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051419 Sema6d-006 protein_coding Mus_musculus 0 219
ENSMUST00000076335 Sema6d-201 protein_coding Mus_musculus 0 219
ENSMUST00000077847 Sema6d-202 protein_coding Mus_musculus 0 219
ENSMUST00000078621 Sema6d-203 protein_coding Mus_musculus 0 219
ENSMUST00000103238 Sema6d-007 protein_coding Mus_musculus 0 219
ENSMUST00000103239 Sema6d-008 protein_coding Mus_musculus 0 219
ENSMUST00000103240 Sema6d-004 protein_coding Mus_musculus 0 219
ENSMUST00000103241 Sema6d-001 protein_coding Mus_musculus 0 219
ENSMUST00000132088 Sema6d-005 retained_intron Mus_musculus 0 219

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