C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000581_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000046148-ENSDARG00000000189 CGP 7955 16:31944579-32621272
GeneTranscriptPositionBiotype
ENSDARG00000000189 (sema6e)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E 		ENSDART00000000198 (sema6e-201) 32526982-32621272 protein_coding
ENSDART00000135723 (sema6e-001) 32470419-32598452 protein_coding
ENSDARG00000046148 (tnfaip8l2b)
tumor necrosis factor, alpha-induced protein 8, like 2b 		ENSDART00000067854 (tnfaip8l2b-201) 31944584-31959803 protein_coding
ENSDART00000150617 (tnfaip8l2b-001) 31944579-31948461 protein_coding
ENSDARG00000093232 (si:dkey-202p8.1)
si:dkey-202p8.1 		ENSDART00000147083 (si:dkey-202p8.1-001) 32341425-32375366 processed_transcript
ENSDARG00000097107 (si:ch211-113h16.1)
si:ch211-113h16.1 		ENSDART00000154767 (si:ch211-113h16.1-001) 32242317-32247643 lincRNA

Danio rerio Ensembl (Zv9)

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CIL_000581_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075592-ENSDARG00000002748 CGP 7955 19:383673-427243
GeneTranscriptPositionBiotype
ENSDARG00000002748 (sema6d)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 		ENSDART00000136361 (sema6d-001) 400160-427243 protein_coding
ENSDARG00000075592 (tnfaip8l2a)
tumor necrosis factor, alpha-induced protein 8, like 2a 		ENSDART00000102725 (tnfaip8l2a-001) 383673-389612 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000581_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000013707-ENSMUSG00000038777 CGP 10090 3:95139521-95174024
GeneTranscriptPositionBiotype
ENSMUSG00000013707 (Tnfaip8l2)
tumor necrosis factor, alpha-induced protein 8-like 2 		ENSMUST00000013851 (Tnfaip8l2-001) 95139521-95142360 protein_coding
ENSMUSG00000038777 (Sema6c)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 		ENSMUST00000090821 (Sema6c-004) 95160505-95174024 protein_coding
ENSMUST00000090823 (Sema6c-001) 95160505-95174024 protein_coding
ENSMUST00000107217 (Sema6c-006) 95164306-95174024 protein_coding
ENSMUST00000126597 (Sema6c-012) 95170805-95171976 retained_intron
ENSMUST00000130662 (Sema6c-011) 95168212-95170140 processed_transcript
ENSMUST00000130814 (Sema6c-007) 95160494-95164427 processed_transcript
ENSMUST00000131620 (Sema6c-010) 95160494-95168346 nonsense_mediated_decay
ENSMUST00000131742 (Sema6c-009) 95160501-95164481 processed_transcript
ENSMUST00000134125 (Sema6c-003) 95160505-95174024 retained_intron
ENSMUST00000141607 (Sema6c-013) 95170323-95171895 retained_intron
ENSMUST00000142306 (Sema6c-008) 95160457-95164542 processed_transcript
ENSMUST00000142449 (Sema6c-002) 95160505-95174024 nonsense_mediated_decay
ENSMUSG00000098198 (Gm9169)
predicted gene 9169 		ENSMUST00000182930 (Gm9169-001) 95144371-95144906 processed_pseudogene
ENSMUSG00000101384 (SEMA6C)
 ENSMUST00000168321 (SEMA6C-201) 95164374-95173316 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000581_0001ENSDARG00000000189ENSDART00000000198ENSDART00000135723ENSDARG00000046148ENSDART00000067854ENSDART00000150617ENSDARG00000093232ENSDART00000147083ENSDARG00000097107ENSDART00000154767CIL_000581_0002ENSDARG00000002748ENSDART00000136361ENSDARG00000075592ENSDART00000102725CIL_000581_0003ENSMUSG00000013707ENSMUST00000013851ENSMUSG00000038777ENSMUST00000090821ENSMUST00000090823ENSMUST00000107217ENSMUST00000126597ENSMUST00000130662ENSMUST00000130814ENSMUST00000131620ENSMUST00000131742ENSMUST00000134125ENSMUST00000141607ENSMUST00000142306ENSMUST00000142449ENSMUSG00000098198ENSMUST00000182930ENSMUSG00000101384ENSMUST00000168321
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000581_0001ENSDARG00000000189ENSDART00000000198ENSDART00000135723ENSDARG00000046148ENSDART00000067854ENSDART00000150617ENSDARG00000093232ENSDART00000147083ENSDARG00000097107ENSDART00000154767CIL_000581_0002ENSDARG00000002748ENSDART00000136361ENSDARG00000075592ENSDART00000102725CIL_000581_0003ENSMUSG00000013707ENSMUST00000013851ENSMUSG00000038777ENSMUST00000090821ENSMUST00000090823ENSMUST00000107217ENSMUST00000130662ENSMUST00000134125ENSMUST00000141607ENSMUST00000142449ENSMUSG00000098198ENSMUST00000182930ENSMUSG00000101384ENSMUST00000168321
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000189 ENSDART00000000198 N/A N/A N/A 5.255±0.00 N/A N/A 0.976±0.00 N/A 0.041±0.00 N/A 1.929±0.00 N/A N/A N/A
ENSDART00000135723 N/A N/A N/A 8.140±0.00 N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000046148 ENSDART00000067854 N/A N/A N/A 0.204±0.08 N/A N/A 1.026±0.03 4.546±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000150617 N/A N/A N/A 0.632±0.16 N/A N/A 0.670±0.12 0.352±0.19 N/A N/A 1.102±0.00 N/A N/A N/A
ENSDARG00000093232 ENSDART00000147083 N/A N/A N/A 4.173±0.71 N/A N/A 0.949±0.00 0.659±0.35 N/A N/A 1.120±0.00 N/A N/A N/A
ENSDARG00000097107 ENSDART00000154767 N/A N/A N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002748 ENSDART00000136361 N/A N/A N/A 0.732±0.43 N/A N/A 5.740±3.55 3.242±2.26 0.277±0.00 N/A 1.257±0.00 N/A N/A N/A
ENSDARG00000075592 ENSDART00000102725 N/A N/A N/A 5.636±5.60 N/A N/A 5.791±2.65 16.750±1.45 1.509±0.00 N/A 6.553±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000013707 ENSMUST00000013851 6.891±1.48 2.392±0.44 3.348±0.28 0.983±0.04 19.249±7.13 3.964±0.55 1.442±0.56 1.624±0.61 3.334±2.11 10.539±2.23 0.548±0.23 4.684±1.39 0.801±0.48 0.378±0.19
ENSMUSG00000038777 ENSMUST00000090821 1.247±0.01 0.833±0.32 0.440±0.00 17.676±2.12 1.836±0.26 N/A N/A 0.437±0.14 0.153±0.03 0.590±0.10 13.764±2.18 1.670±0.30 1.022±1.13 3.407±1.08
ENSMUST00000090823 N/A N/A N/A N/A 3.189±0.31 0.255±0.10 0.941±0.32 N/A 0.099±0.02 N/A 9.753±2.14 1.689±0.00 N/A N/A
ENSMUST00000107217 N/A 0.441±0.08 N/A N/A N/A N/A N/A N/A N/A N/A 7.823±0.46 N/A 1.397±0.00 N/A
ENSMUST00000126597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130662 N/A N/A N/A N/A 13.042±0.00 N/A N/A N/A 0.795±0.00 N/A N/A 5.869±0.00 4.428±0.00 N/A
ENSMUST00000130814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134125 0.897±0.47 N/A N/A 7.724±2.82 N/A N/A 0.308±0.00 0.323±0.05 0.119±0.03 0.455±0.00 N/A 2.035±0.95 0.389±0.25 1.091±0.24
ENSMUST00000141607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.706±1.18 N/A
ENSMUST00000142306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142449 1.218±0.60 1.230±0.16 N/A 4.338±0.00 2.275±0.99 0.328±0.09 0.617±0.00 0.555±0.14 0.147±0.05 0.576±0.15 N/A 2.499±0.84 0.279±0.00 1.392±0.06
ENSMUSG00000098198 ENSMUST00000182930 0.095±0.00 N/A 0.125±0.05 1.170±1.31 N/A N/A N/A 0.142±0.06 1.124±1.88 N/A N/A 0.381±0.10 0.100±0.06 0.209±0.11
ENSMUSG00000101384 ENSMUST00000168321 2.523±1.52 N/A 0.827±0.01 20.543±9.09 4.516±1.44 0.771±0.18 1.460±0.16 0.874±0.32 0.282±0.14 1.326±0.16 8.794±0.00 7.955±2.07 0.570±0.01 5.055±1.13

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