Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000581_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000046148-ENSDARG00000000189	CGP	7955	16:31944579-32621272
Gene	Transcript	Position	Biotype
ENSDARG00000000189 (sema6e) sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E	ENSDART00000000198 (sema6e-201)	32526982-32621272	protein_coding
	ENSDART00000135723 (sema6e-001)	32470419-32598452	protein_coding
ENSDARG00000046148 (tnfaip8l2b) tumor necrosis factor, alpha-induced protein 8, like 2b	ENSDART00000067854 (tnfaip8l2b-201)	31944584-31959803	protein_coding
	ENSDART00000150617 (tnfaip8l2b-001)	31944579-31948461	protein_coding
ENSDARG00000093232 (si:dkey-202p8.1) si:dkey-202p8.1	ENSDART00000147083 (si:dkey-202p8.1-001)	32341425-32375366	processed_transcript
ENSDARG00000097107 (si:ch211-113h16.1) si:ch211-113h16.1	ENSDART00000154767 (si:ch211-113h16.1-001)	32242317-32247643	lincRNA

CIL_000581_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000075592-ENSDARG00000002748	CGP	7955	19:383673-427243
Gene	Transcript	Position	Biotype
ENSDARG00000002748 (sema6d) sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSDART00000136361 (sema6d-001)	400160-427243	protein_coding
ENSDARG00000075592 (tnfaip8l2a) tumor necrosis factor, alpha-induced protein 8, like 2a	ENSDART00000102725 (tnfaip8l2a-001)	383673-389612	protein_coding

CIL_000581_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000013707-ENSMUSG00000038777	CGP	10090	3:95139521-95174024
Gene	Transcript	Position	Biotype
ENSMUSG00000013707 (Tnfaip8l2) tumor necrosis factor, alpha-induced protein 8-like 2	ENSMUST00000013851 (Tnfaip8l2-001)	95139521-95142360	protein_coding
ENSMUSG00000038777 (Sema6c) sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	ENSMUST00000090821 (Sema6c-004)	95160505-95174024	protein_coding
	ENSMUST00000090823 (Sema6c-001)	95160505-95174024	protein_coding
	ENSMUST00000107217 (Sema6c-006)	95164306-95174024	protein_coding
	ENSMUST00000126597 (Sema6c-012)	95170805-95171976	retained_intron
	ENSMUST00000130662 (Sema6c-011)	95168212-95170140	processed_transcript
	ENSMUST00000130814 (Sema6c-007)	95160494-95164427	processed_transcript
	ENSMUST00000131620 (Sema6c-010)	95160494-95168346	nonsense_mediated_decay
	ENSMUST00000131742 (Sema6c-009)	95160501-95164481	processed_transcript
	ENSMUST00000134125 (Sema6c-003)	95160505-95174024	retained_intron
	ENSMUST00000141607 (Sema6c-013)	95170323-95171895	retained_intron
	ENSMUST00000142306 (Sema6c-008)	95160457-95164542	processed_transcript
	ENSMUST00000142449 (Sema6c-002)	95160505-95174024	nonsense_mediated_decay
ENSMUSG00000098198 (Gm9169) predicted gene 9169	ENSMUST00000182930 (Gm9169-001)	95144371-95144906	processed_pseudogene
ENSMUSG00000101384 (SEMA6C)	ENSMUST00000168321 (SEMA6C-201)	95164374-95173316	protein_coding

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000000189

ENSDART00000000198

N/A

5.255±0.00

N/A

0.976±0.00

N/A

0.041±0.00

N/A

1.929±0.00

N/A

ENSDART00000135723

N/A

8.140±0.00

N/A

0.132±0.00

N/A

ENSDARG00000046148

ENSDART00000067854

N/A

0.204±0.08

N/A

1.026±0.03

4.546±0.00

N/A

ENSDART00000150617

N/A

0.632±0.16

N/A

0.670±0.12

0.352±0.19

N/A

1.102±0.00

N/A

ENSDARG00000093232

ENSDART00000147083

N/A

4.173±0.71

N/A

0.949±0.00

0.659±0.35

N/A

1.120±0.00

N/A

ENSDARG00000097107

ENSDART00000154767

N/A

0.248±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000002748

ENSDART00000136361

N/A

0.732±0.43

N/A

5.740±3.55

3.242±2.26

0.277±0.00

N/A

1.257±0.00

N/A

ENSDARG00000075592

ENSDART00000102725

N/A

5.636±5.60

N/A

5.791±2.65

16.750±1.45

1.509±0.00

N/A

6.553±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000013707

ENSMUST00000013851

6.891±1.48

2.392±0.44

3.348±0.28

0.983±0.04

19.249±7.13

3.964±0.55

1.442±0.56

1.624±0.61

3.334±2.11

10.539±2.23

0.548±0.23

4.684±1.39

0.801±0.48

0.378±0.19

ENSMUSG00000038777

ENSMUST00000090821

1.247±0.01

0.833±0.32

0.440±0.00

17.676±2.12

1.836±0.26

N/A

0.437±0.14

0.153±0.03

0.590±0.10

13.764±2.18

1.670±0.30

1.022±1.13

3.407±1.08

ENSMUST00000090823

N/A

3.189±0.31

0.255±0.10

0.941±0.32

N/A

0.099±0.02

N/A

9.753±2.14

1.689±0.00

N/A

ENSMUST00000107217

N/A

0.441±0.08

N/A

7.823±0.46

N/A

1.397±0.00

N/A

ENSMUST00000126597

N/A

ENSMUST00000130662

N/A

13.042±0.00

N/A

0.795±0.00

N/A

5.869±0.00

4.428±0.00

N/A

N/A

N/A

N/A

0.897±0.47

N/A

7.724±2.82

N/A

0.308±0.00

0.323±0.05

0.119±0.03

0.455±0.00

N/A

2.035±0.95

0.389±0.25

1.091±0.24

ENSMUST00000141607

N/A

1.706±1.18

N/A

ENSMUST00000142306

N/A

ENSMUST00000142449

1.218±0.60

1.230±0.16

N/A

4.338±0.00

2.275±0.99

0.328±0.09

0.617±0.00

0.555±0.14

0.147±0.05

0.576±0.15

N/A

2.499±0.84

0.279±0.00

1.392±0.06

ENSMUSG00000098198

ENSMUST00000182930

0.095±0.00

N/A

0.125±0.05

1.170±1.31

N/A

0.142±0.06

1.124±1.88

N/A

0.381±0.10

0.100±0.06

0.209±0.11

ENSMUSG00000101384

ENSMUST00000168321

2.523±1.52

N/A

0.827±0.01

20.543±9.09

4.516±1.44

0.771±0.18

1.460±0.16

0.874±0.32

0.282±0.14

1.326±0.16

8.794±0.00

7.955±2.07

0.570±0.01

5.055±1.13

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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