C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103239 Sema6d-008 ENSMUSG00000027200 10090 + 2:124610573-124667770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103239 4.444±1.46 3.190±0.69 1.526±0.02 4.101±2.44 3.688±1.53 6.301±1.66 2.562±0.79 1.139±0.28 1.603±0.52 14.828±4.24 0.690±0.10 4.373±2.13 2.868±1.09 0.190±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0002 CGP 2:124089969-125088677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0014911 IDA positive regulation of smooth muscle cell migration
GO:0014912 IDA negative regulation of smooth muscle cell migration
GO:0016021 IEA integral component of membrane
GO:0021591 IDA ventricular system development
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136361 sema6d-001 protein_coding Danio_rerio 0 219
ENST00000316364 SEMA6D-004 protein_coding Homo_sapiens 0 4665
ENST00000354744 SEMA6D-005 protein_coding Homo_sapiens 0 2259
ENST00000355997 SEMA6D-201 protein_coding Homo_sapiens 0 2172
ENST00000358066 SEMA6D-006 protein_coding Homo_sapiens 0 2170
ENST00000389425 SEMA6D-003 protein_coding Homo_sapiens 0 1877
ENST00000389428 SEMA6D-007 protein_coding Homo_sapiens 0 2170
ENST00000536845 SEMA6D-002 protein_coding Homo_sapiens 0 4117
ENST00000537942 SEMA6D-202 protein_coding Homo_sapiens 0 2170
ENST00000558014 SEMA6D-001 protein_coding Homo_sapiens 0 2170
ENST00000558431 SEMA6D-014 retained_intron Homo_sapiens 0 387
ENST00000558816 SEMA6D-008 protein_coding Homo_sapiens 0 2172
ENST00000559064 SEMA6D-015 protein_coding Homo_sapiens 3e-36 156
ENST00000559196 SEMA6D-013 protein_coding Homo_sapiens 0 835
ENST00000560006 SEMA6D-016 protein_coding Homo_sapiens 0 730
ENST00000561133 SEMA6D-012 protein_coding Homo_sapiens 0 553

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