C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen, type V, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000139598 col5a1-001 ENSDARG00000012593 7955 + 21:6513292-6682437 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000139598
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000139598 0.946±0.00 5.133±2.81 5.176±2.47 0.459±0.00 4.120±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IEA collagen

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371817 COL5A1-001 protein_coding Homo_sapiens 0 2012
ENST00000371820 COL5A1-003 protein_coding Homo_sapiens 0 425
ENST00000460264 COL5A1-002 retained_intron Homo_sapiens 0 351
ENST00000465877 COL5A1-007 retained_intron Homo_sapiens 0 302
ENST00000618395 COL5A1-201 protein_coding Homo_sapiens 0 1934

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