C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type V, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618395 COL5A1-201 ENSG00000130635 9606 + 9:134641805-134844840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverMuscleOvaryENST00000618395
Transcript ID Brain Colon Liver Muscle Ovary
ENST00000618395 0.154±0.07 0.955±0.00 1.030±0.17 1.012±0.00 0.835±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000152 CIL_000152_0001 CGP 9:134317098-134844843
CIL_0001EU CIL_0001EU_0001 CGP 9:134641774-134887520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IEA collagen trimer

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028280 Col5a1-001 protein_coding Mus_musculus 0 6277
ENSDART00000139598 col5a1-001 protein_coding Danio_rerio 0 1934
ENSMUST00000145423 Col5a1-002 protein_coding Mus_musculus 0 924

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