C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type V, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371817 COL5A1-001 ENSG00000130635 9606 + 9:134641774-134844843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371817
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371817 5.551±0.00 9.747±0.00 0.269±0.00 16.544±9.55 5.544±2.12 1.633±1.20 4.799±0.00 3.035±2.33 2.949±2.46 0.403±0.00 23.342±17.23 76.962±10.15 6.440±4.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000152 CIL_000152_0001 CGP 9:134317098-134844843
CIL_0001EU CIL_0001EU_0001 CGP 9:134641774-134887520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0003007 IEA heart morphogenesis
GO:0005178 NAS integrin binding
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005588 IMP collagen type V trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IMP cell adhesion
GO:0007411 TAS axon guidance
GO:0008201 IDA heparin binding
GO:0016477 IMP cell migration
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IMP extracellular matrix
GO:0032964 IMP collagen biosynthetic process
GO:0035313 IMP wound healing, spreading of epidermal cells
GO:0035989 IEA tendon development
GO:0043206 IMP extracellular fibril organization
GO:0043394 IPI proteoglycan binding
GO:0043588 IMP skin development
GO:0045112 IMP integrin biosynthetic process
GO:0046872 IEA metal ion binding
GO:0048407 IDA platelet-derived growth factor binding
GO:0048592 IMP eye morphogenesis
GO:0051128 IEA regulation of cellular component organization
GO:0070062 IDA extracellular vesicular exosome
GO:1903225 IDA negative regulation of endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028280 Col5a1-001 protein_coding Mus_musculus 0 6449
ENSDART00000139598 col5a1-001 protein_coding Danio_rerio 0 2012
ENSMUST00000145423 Col5a1-002 protein_coding Mus_musculus 0 1051

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