C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caveolin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148700 cav1-002 ENSDARG00000052004 7955 + 25:19051556-19062795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENSDART00000148700
Transcript ID Heart Kidney
ENSDART00000148700 185.822±14.20 27.485±5.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063M CIL_00063M_0001 CGP 25:19043878-19180696
CIL_00063L CIL_00063L_0001 CGP 25:19050766-19180696

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0001756 IMP somitogenesis
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0005901 IEA caveola
GO:0007507 IMP heart development
GO:0008013 IDA beta-catenin binding
GO:0009953 IMP dorsal/ventral pattern formation
GO:0016020 IEA membrane
GO:0030299 IPI intestinal cholesterol absorption
GO:0048884 IMP neuromast development
GO:0060036 IMP notochord cell vacuolation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007799 Cav1-001 protein_coding Mus_musculus 0 254
ENSMUST00000115453 Cav1-002 protein_coding Mus_musculus 0 254
ENSMUST00000115454 Cav1-007 protein_coding Mus_musculus 0 254
ENSMUST00000115455 Cav1-009 protein_coding Mus_musculus 2e-40 169
ENSMUST00000115456 Cav1-008 protein_coding Mus_musculus 0 254
ENSMUST00000123439 Cav1-006 protein_coding Mus_musculus 1e-17 94
ENSMUST00000130505 Cav1-003 protein_coding Mus_musculus 0.0000000000005 79
ENSMUST00000133065 Cav1-004 processed_transcript Mus_musculus 0.0000000000001 81
ENSMUST00000150901 Cav1-005 protein_coding Mus_musculus 0.00000000000003 82
ENSMUST00000177234 Cav1-010 nonsense_mediated_decay Mus_musculus 0 209

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