C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab geranylgeranyltransferase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000149357 rabggta-001 ENSDARG00000061024 7955 + 23:1725582-1749518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000149357
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000149357 4.934±2.32 1.280±0.58 0.512±0.00 0.381±0.00 1.153±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0008318 IEA protein prenyltransferase activity
GO:0018342 IEA protein prenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216840 RABGGTA-002 protein_coding Homo_sapiens 0.000000000000001 90
ENST00000399409 RABGGTA-003 protein_coding Homo_sapiens 0.000000000000001 90
ENST00000543002 RABGGTA-006 retained_intron Homo_sapiens 7e-16 90
ENST00000558376 RABGGTA-001 nonsense_mediated_decay Homo_sapiens 9e-16 90
ENST00000559551 RABGGTA-007 retained_intron Homo_sapiens 0.000000000000001 90
ENST00000559974 RABGGTA-008 nonsense_mediated_decay Homo_sapiens 0.000000000000001 90
ENST00000560777 RABGGTA-012 protein_coding Homo_sapiens 6e-16 90
ENST00000560871 RABGGTA-015 processed_transcript Homo_sapiens 0.000000000003 77
ENST00000560998 RABGGTA-005 retained_intron Homo_sapiens 0.000000000000001 90

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