C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab geranylgeranyltransferase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558376 RABGGTA-001 ENSG00000100949 9606 - 14:24265557-24271549 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleTestisENST00000558376
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Testis
ENST00000558376 1.558±0.00 2.637±0.00 0.285±0.00 2.860±1.00 5.937±0.00 1.722±0.00 2.774±0.00 0.339±0.00 6.352±0.00 5.432±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SH CIL_0001SH_0001 CGP 14:24249114-24271739
CIL_0002LB CIL_0002LB_0001 CGP 14:24265538-24299833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0008270 IEA zinc ion binding
GO:0008318 IEA protein prenyltransferase activity
GO:0018342 IEA protein prenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163889 Rabggta-202 protein_coding Mus_musculus 0 1940
ENSMUST00000169237 Rabggta-203 protein_coding Mus_musculus 0 1929
ENSMUST00000062861 Rabggta-201 protein_coding Mus_musculus 0 1925
ENSDART00000099024 rabggta-201 protein_coding Danio_rerio 9e-16 90
ENSDART00000149357 rabggta-001 protein_coding Danio_rerio 9e-16 90

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