C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab geranylgeranyltransferase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216840 RABGGTA-002 ENSG00000100949 9606 - 14:24265538-24271739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverLungOvaryPlacentaENST00000216840
Transcript ID Heart Kidney Liver Lung Ovary Placenta
ENST00000216840 0.851±0.14 0.109±0.00 0.320±0.00 0.362±0.00 2.822±1.66 9.322±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SH CIL_0001SH_0001 CGP 14:24249114-24271739
CIL_0002LB CIL_0002LB_0001 CGP 14:24265538-24299833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 ISS:IEA Rab geranylgeranyltransferase activity
GO:0005515 IEA protein binding
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0006464 TAS cellular protein modification process
GO:0007601 TAS visual perception
GO:0008270 IEA zinc ion binding
GO:0008318 IEA protein prenyltransferase activity
GO:0017137 ISS Rab GTPase binding
GO:0018342 IEA protein prenylation
GO:0018344 ISS protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163889 Rabggta-202 protein_coding Mus_musculus 0 1964
ENSMUST00000169237 Rabggta-203 protein_coding Mus_musculus 0 1960
ENSMUST00000062861 Rabggta-201 protein_coding Mus_musculus 0 1956
ENSDART00000099024 rabggta-201 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000149357 rabggta-001 protein_coding Danio_rerio 0.000000000000001 90

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