C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cholinergic receptor, nicotinic, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000149976 chrna3-001 ENSDARG00000054497 7955 + 18:49572937-49581523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000149976
Transcript ID Brain Heart Kidney Muscle
ENSDART00000149976 0.146±0.00 0.040±0.00 0.044±0.00 0.151±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005216 IEA ion channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370263 CHRNA4-001 protein_coding Homo_sapiens 0 359
ENST00000463705 CHRNA4-002 processed_transcript Homo_sapiens 0 359
ENST00000467563 CHRNA4-004 processed_transcript Homo_sapiens 0 359
ENST00000498043 CHRNA4-007 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000615287 CHRNA4-201 protein_coding Homo_sapiens 0 359

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