C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 4 (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498043 CHRNA4-007 ENSG00000101204 9606 - 20:63346594-63359699 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMusclePlacentaENST00000498043
Transcript ID Lung Muscle Placenta
ENST00000498043 0.112±0.00 0.548±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010A CIL_00010A_0001 CGP 20:63293186-63378401
CIL_0000X3 CIL_0000X3_0001 CGP 20:63343310-63472638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067120 Chrna4-001 protein_coding Mus_musculus 0 1343
ENSMUST00000108851 Chrna4-002 protein_coding Mus_musculus 0 1327
ENSMUST00000022620 Chrna2-001 protein_coding Mus_musculus 0 693
ENSDART00000079613 chrna2b-201 protein_coding Danio_rerio 0 501
ENSDART00000136317 chrna2b-001 protein_coding Danio_rerio 0 501
ENSDART00000033947 chrna2a-001 protein_coding Danio_rerio 0 497
ENSDART00000002296 chrna3-201 protein_coding Danio_rerio 0 359
ENSDART00000149976 chrna3-001 protein_coding Danio_rerio 0 359
ENSDART00000127176 CHRNA4 (3 of 3)-201 protein_coding Danio_rerio 0 318
ENSDART00000153740 CHRNA4 (3 of 3)-001 protein_coding Danio_rerio 0 318
ENSMUST00000033882 Chrna6-201 protein_coding Mus_musculus 0 276
ENSMUST00000029562 Chrnb2-201 protein_coding Mus_musculus 0 239
ENSMUST00000135766 Chrna4-004 nonsense_mediated_decay Mus_musculus 0 206

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