C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 4 (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467563 CHRNA4-004 ENSG00000101204 9606 - 20:63346594-63361304 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartKidneyPlacentaENST00000467563
Transcript ID Adrenal Bladder Breast Heart Kidney Placenta
ENST00000467563 0.017±0.00 0.374±0.00 0.020±0.00 0.039±0.00 0.142±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010A CIL_00010A_0001 CGP 20:63293186-63378401
CIL_0000X3 CIL_0000X3_0001 CGP 20:63343310-63472638

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067120 Chrna4-001 protein_coding Mus_musculus 0 1631
ENSMUST00000108851 Chrna4-002 protein_coding Mus_musculus 0 1615
ENSMUST00000022620 Chrna2-001 protein_coding Mus_musculus 0 802
ENSDART00000033947 chrna2a-001 protein_coding Danio_rerio 0 556
ENSDART00000079613 chrna2b-201 protein_coding Danio_rerio 0 538
ENSDART00000136317 chrna2b-001 protein_coding Danio_rerio 0 538
ENSMUST00000135766 Chrna4-004 nonsense_mediated_decay Mus_musculus 0 536
ENSDART00000002296 chrna3-201 protein_coding Danio_rerio 0 359
ENSDART00000149976 chrna3-001 protein_coding Danio_rerio 0 359
ENSDART00000127176 CHRNA4 (3 of 3)-201 protein_coding Danio_rerio 0 353
ENSDART00000153740 CHRNA4 (3 of 3)-001 protein_coding Danio_rerio 0 318
ENSMUST00000033882 Chrna6-201 protein_coding Mus_musculus 0 276
ENSMUST00000029562 Chrnb2-201 protein_coding Mus_musculus 0 239

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