C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: makorin, ring finger protein, 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000449 Mkrn2-201 ENSMUSG00000000439 10090 + 6:115601938-115618670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000449
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000449 21.667±2.50 47.963±1.31 11.013±1.02 24.843±3.01 18.914±2.35 20.189±1.01 14.043±2.02 11.962±3.14 21.041±2.63 17.766±1.21 24.986±9.71 9.738±0.96 26.086±9.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KF CIL_0004KF_0002 CGP 6:115583544-115618670
CIL_0005SJ CIL_0005SJ_0002 CGP 6:115601938-115676635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005622 ISS intracellular
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000170447 MKRN2-001 protein_coding Homo_sapiens 0 1299
ENST00000251849 RAF1-001 protein_coding Homo_sapiens 0.000000008 68
ENST00000255977 MKRN1-001 protein_coding Homo_sapiens 0.00002 57
ENST00000411987 MKRN2-002 protein_coding Homo_sapiens 0 1101
ENST00000443720 MKRN1-002 protein_coding Homo_sapiens 0.000008 57
ENST00000445263 MKRN5P-001 processed_pseudogene Homo_sapiens 0.000007 57
ENST00000448482 MKRN2-003 protein_coding Homo_sapiens 0 1277
ENST00000475010 MKRN1-006 retained_intron Homo_sapiens 0.00002 57
ENST00000481705 MKRN1-009 processed_transcript Homo_sapiens 0.000003 57
ENST00000495305 MKRN1-003 nonsense_mediated_decay Homo_sapiens 0.000007 57
ENST00000546624 MKRN9P-001 transcribed_processed_pseudogene Homo_sapiens 0.00003 55

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