C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: makorin ring finger protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255977 MKRN1-001 ENSG00000133606 9606 - 7:140453040-140479569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000255977
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000255977 18.798±0.00 9.006±0.00 7.382±6.16 8.221±3.12 10.172±5.29 6.664±4.24 9.179±5.27 3.441±1.45 7.763±6.43 12.540±7.50 9.866±6.13 38.935±14.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZU CIL_0008ZU_0001 VISTA 7:139910788-140514447
CIL_000305 CIL_000305_0001 CGP 7:140404043-140479569

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0003682 IEA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031985 Mkrn1-001 protein_coding Mus_musculus 0 2891
ENSMUST00000114823 Mkrn1-004 protein_coding Mus_musculus 0 2495
ENSMUST00000122035 Mkrn1-ps1-001 processed_pseudogene Mus_musculus 0 1663
ENSMUST00000051671 Mkrn1-005 protein_coding Mus_musculus 0 1439
ENSMUST00000122996 Mkrn1-003 protein_coding Mus_musculus 0 1062
ENSMUST00000114822 Mkrn1-002 protein_coding Mus_musculus 0 728
ENSMUST00000150575 Mkrn1-007 protein_coding Mus_musculus 0 647
ENSMUST00000121895 Gm15989-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000146785 Mkrn1-006 protein_coding Mus_musculus 0 520
ENSMUST00000122874 Mkrn1-008 processed_transcript Mus_musculus 0 520
ENSDART00000061070 mkrn1-001 protein_coding Danio_rerio 0 403
ENSMUST00000094340 Mkrn3-201 protein_coding Mus_musculus 0 329
ENSDART00000131244 mkrn1-006 retained_intron Danio_rerio 0 250
ENSMUST00000000449 Mkrn2-201 protein_coding Mus_musculus 0.00002 57

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