C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000793 Polr3d-201 ENSMUSG00000000776 10090 - 14:70438748-70443471 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000793 4.643±1.67 5.608±0.97 5.365±0.03 7.919±1.72 4.591±1.63 5.445±2.08 3.284±0.33 3.273±0.86 5.272±3.31 4.452±0.82 5.979±0.97 9.455±2.79 10.710±8.08 3.545±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000812 CIL_000812_0002 VISTA 14:70334498-70935318
CIL_0008ZI CIL_0008ZI_0002 VISTA 14:70339990-70941193
CIL_000810 CIL_000810_0002 VISTA 14:70383794-70984839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IC nucleus
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0006383 IEA transcription from RNA polymerase III promoter
GO:0032728 ISS positive regulation of interferon-beta production
GO:0045087 IEA innate immune response
GO:0045089 ISS positive regulation of innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306433 POLR3D-003 protein_coding Homo_sapiens 0 1371
ENST00000397802 POLR3D-001 protein_coding Homo_sapiens 0 1369
ENST00000398689 POLR3DP1-001 processed_pseudogene Homo_sapiens 0 848
ENST00000517789 POLR3D-006 retained_intron Homo_sapiens 0 902
ENST00000518039 POLR3D-002 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000519237 POLR3D-005 protein_coding Homo_sapiens 0 673

Loading