C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397802 POLR3D-001 ENSG00000168495 9606 + 8:22245235-22254600 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397802
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397802 0.720±0.00 0.844±0.11 0.612±0.00 0.482±0.07 0.503±0.00 0.447±0.04 0.959±0.00 1.149±0.00 0.652±0.33 0.807±0.11 0.784±0.28 2.036±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0008ZI CIL_0008ZI_0001 VISTA 8:21743578-22344815
CIL_000812 CIL_000812_0001 VISTA 8:21749915-22350771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005654 TAS nucleoplasm
GO:0005666 IEA:IBA DNA-directed RNA polymerase III complex
GO:0005829 TAS cytosol
GO:0006383 IEA:TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0032728 IDA positive regulation of interferon-beta production
GO:0045087 TAS innate immune response
GO:0045089 IDA positive regulation of innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180358 Polr3d-202 protein_coding Mus_musculus 0 1380
ENSMUST00000000793 Polr3d-201 protein_coding Mus_musculus 0 1369
ENSMUST00000189018 Ccdc86-003 retained_intron Mus_musculus 0.000000001 71
ENSMUST00000057256 6030458C11Rik-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000115636 Suv39h1-004 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000167619 Diap2-201 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000113320 Diap2-006 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000146254 Cd300lf-002 processed_transcript Mus_musculus 0.0000002 64
ENSMUST00000171143 Fam102b-201 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000046924 Fam102b-001 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000169308 0610011F06Rik-006 protein_coding Mus_musculus 0.0000006 62
ENSMUST00000110456 0610011F06Rik-005 nonsense_mediated_decay Mus_musculus 0.0000006 62
ENSMUST00000171415 Ndufb8-002 protein_coding Mus_musculus 0.000002 60
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.000008 58
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.000008 58
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.000008 58
ENSMUST00000021800 Mcur1-201 protein_coding Mus_musculus 0.00003 57
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0001 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0001 55

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