C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-raf murine sarcoma 3611 viral oncogene homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001155 Araf-001 ENSMUSG00000001127 10090 + X:20848543-20860519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001155 30.868±6.31 92.268±3.59 25.808±0.47 22.575±0.00 41.745±8.61 57.464±7.14 15.664±3.38 47.954±8.08 32.902±13.33 35.954±5.33 8.351±0.74 53.616±12.52 11.666±6.10 8.410±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GC CIL_0005GC_0002 CGP X:20797814-20921004

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005057 IEA receptor signaling protein activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006468 IEA protein phosphorylation
GO:0032006 ISS regulation of TOR signaling
GO:0032434 ISS regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290277 ARAF-201 protein_coding Homo_sapiens 0 2501
ENST00000377039 ARAF-005 protein_coding Homo_sapiens 0 817
ENST00000377045 ARAF-001 protein_coding Homo_sapiens 0 2542
ENST00000469505 ARAF-002 processed_transcript Homo_sapiens 0 339
ENST00000470206 ARAF-003 processed_transcript Homo_sapiens 0 377
ENST00000489496 ARAF-004 processed_transcript Homo_sapiens 0 529

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