C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trans-acting transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001326 Sp1-001 ENSMUSG00000001280 10090 + 15:102406380-102436404 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001326 8.501±3.78 4.669±0.51 7.785±2.33 4.969±2.98 8.403±0.89 5.216±1.22 3.998±1.16 7.815±1.09 6.355±2.73 12.201±2.43 2.250±0.38 9.014±3.15 8.447±4.51 3.630±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060O CIL_00060O_0002 CGP 15:102356609-102436404
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0001W1 CIL_0001W1_0002 CGP 15:102406143-102454630

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000987 IDA core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001503 IGI ossification
GO:0001701 IGI in utero embryonic development
GO:0001829 IGI trophectodermal cell differentiation
GO:0001889 IGI liver development
GO:0001892 IGI embryonic placenta development
GO:0003677 IDA DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008022 IEA protein C-terminus binding
GO:0008134 IEA transcription factor binding
GO:0030219 IGI megakaryocyte differentiation
GO:0030324 IGI lung development
GO:0032993 IEA protein-DNA complex
GO:0035035 IEA histone acetyltransferase binding
GO:0035326 IDA enhancer binding
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0043353 IGI enucleate erythrocyte differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0043923 IEA positive regulation by host of viral transcription
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048596 IGI embryonic camera-type eye morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0060136 IGI embryonic process involved in female pregnancy
GO:0060216 IGI definitive hemopoiesis
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327443 SP1-001 protein_coding Homo_sapiens 0 3685
ENST00000426431 SP1-002 protein_coding Homo_sapiens 0 3792
ENST00000548560 SP1-004 protein_coding Homo_sapiens 0 1011
ENST00000551969 SP1-003 protein_coding Homo_sapiens 0 490

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