C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolar protein with MIF4G domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001611 Nom1-001 ENSMUSG00000001569 10090 + 5:29434664-29453506 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001611
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001611 2.091±0.44 4.486±2.01 3.007±0.18 2.843±1.26 2.560±1.59 2.429±1.85 1.660±0.13 2.464±0.81 2.367±0.50 3.610±1.21 2.573±0.20 4.567±2.38 6.930±4.09 3.035±2.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025V CIL_00025V_0002 CGP 5:29229814-29453506
CIL_0007PG CIL_0007PG_0002 UCNEbase 5:29276112-29620813
CIL_00025W CIL_00025W_0002 CGP 5:29434664-29478470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275820 NOM1-001 protein_coding Homo_sapiens 0 1404
ENST00000460332 NOM1-002 processed_transcript Homo_sapiens 0 233
ENST00000485661 NOM1-007 retained_intron Homo_sapiens 0 361

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