C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001878 Hoxd12-001 ENSMUSG00000001823 10090 + 2:74675013-74677705 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverPlacentaTestisENSMUST00000001878
Transcript ID Adipose Bladder Brain Colon Kidney Liver Placenta Testis
ENSMUST00000001878 0.015±0.00 1.259±0.15 0.012±0.01 0.941±0.50 0.023±0.00 0.063±0.05 0.109±0.07 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_0001HG CIL_0001HG_0002 CGP 2:74668310-74677705
CIL_0001HF CIL_0001HF_0002 CGP 2:74675013-74687016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007389 IGI pattern specification process
GO:0042733 IGI embryonic digit morphogenesis
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404162 HOXD12-002 protein_coding Homo_sapiens 0 329
ENST00000406506 HOXD12-001 protein_coding Homo_sapiens 0 963

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