C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170178-ENSG00000128713 CGP 9606 2:176099730-176109754
GeneTranscriptPositionBiotype
ENSG00000128710 (HOXD10)
homeobox D10 		ENST00000249501 (HOXD10-001) 176116579-176119942 protein_coding
ENST00000490088 (HOXD10-002) 176108790-176119394 processed_transcript
ENST00000549469 (HOXD10-003) 176108877-176119243 processed_transcript
ENSG00000128713 (HOXD11)
homeobox D11 		ENST00000249504 (HOXD11-001) 176107286-176109588 protein_coding
ENST00000498438 (HOXD11-003) 176104216-176109754 processed_transcript
ENST00000619244 (HOXD11-201) 176107356-176109243 protein_coding
ENSG00000170178 (HOXD12)
homeobox D12 		ENST00000404162 (HOXD12-002) 176099802-176100760 protein_coding
ENST00000406506 (HOXD12-001) 176099730-176101193 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0001HF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001823-ENSMUSG00000042499 CGP 10090 2:74675013-74687016
GeneTranscriptPositionBiotype
ENSMUSG00000001823 (Hoxd12)
homeobox D12 		ENSMUST00000001878 (Hoxd12-001) 74675013-74677705 protein_coding
ENSMUSG00000042499 (Hoxd11)
homeobox D11 		ENSMUST00000048086 (Hoxd11-002) 74679557-74687016 processed_transcript
ENSMUST00000142312 (Hoxd11-001) 74682323-74684168 protein_coding
ENSMUSG00000099521 (RP23-313J15.17)
predicted gene 28309 		ENSMUST00000136302 (RP23-313J15.17-001) 74683446-74694194 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisCIL_0001HF_0001ENSG00000128710ENST00000249501ENST00000490088ENST00000549469ENSG00000128713ENST00000249504ENST00000498438ENST00000619244ENSG00000170178ENST00000404162ENST00000406506CIL_0001HF_0002ENSMUSG00000001823ENSMUST00000001878ENSMUSG00000042499ENSMUST00000048086ENSMUST00000142312ENSMUSG00000099521ENSMUST00000136302
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisCIL_0001HF_0001ENSG00000128710ENST00000249501ENST00000490088ENST00000549469ENSG00000128713ENST00000249504ENST00000498438ENST00000619244ENSG00000170178ENST00000404162ENST00000406506CIL_0001HF_0002ENSMUSG00000001823ENSMUST00000001878ENSMUSG00000042499ENSMUST00000048086ENSMUST00000142312ENSMUSG00000099521ENSMUST00000136302
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSG00000128710 ENST00000249501 0.301±0.00 0.979±0.00 2.790±0.00 N/A 1.649±1.53 0.889±0.19 N/A 2.062±2.03 0.555±0.00 0.033±0.00 0.628±0.37 0.325±0.17 1.875±0.57
ENST00000490088 N/A N/A N/A N/A N/A 1.061±0.00 N/A 0.036±0.00 N/A N/A N/A 0.086±0.00 N/A
ENST00000549469 N/A N/A 2.852±0.00 N/A 0.197±0.00 N/A N/A N/A N/A 0.082±0.00 0.915±0.00 0.209±0.00 N/A
ENSG00000128713 ENST00000249504 N/A N/A N/A N/A N/A 1.966±0.00 N/A N/A N/A N/A N/A 1.064±0.00 0.886±0.00
ENST00000498438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.681±0.00 0.640±0.00 N/A
ENST00000619244 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A 1.970±0.00 N/A N/A N/A N/A
ENSG00000170178 ENST00000404162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 0.094±0.00 N/A
ENST00000406506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUSG00000001823 ENSMUST00000001878 0.015±0.00 N/A 1.259±0.15 0.012±0.01 N/A 0.941±0.50 N/A 0.023±0.00 0.063±0.05 N/A N/A 0.109±0.07 0.025±0.00
ENSMUSG00000042499 ENSMUST00000048086 N/A N/A 2.315±0.00 0.006±0.00 N/A N/A 0.009±0.00 0.577±0.00 0.008±0.01 N/A 0.248±0.00 0.051±0.03 0.049±0.03
ENSMUST00000142312 N/A N/A N/A 0.020±0.00 N/A 2.091±0.58 N/A 1.491±0.00 0.056±0.00 0.072±0.04 0.798±0.10 N/A 0.129±0.00
ENSMUSG00000099521 ENSMUST00000136302 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A 0.742±0.00 N/A

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