C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538966 PLXNB3-201 ENSG00000198753 9606 + X:153764196-153779346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverOvaryENST00000538966
Transcript ID Adipose Brain Colon Liver Ovary
ENST00000538966 0.578±0.00 5.376±0.00 1.224±0.00 0.398±0.00 0.441±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GI CIL_0007GI_0002 CGP X:153724868-153779346
CIL_0007GB CIL_0007GB_0002 CGP X:153764196-153785732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001938 IMP positive regulation of endothelial cell proliferation
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005886 TAS plasma membrane
GO:0007162 IDA negative regulation of cell adhesion
GO:0007165 IEA signal transduction
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0010593 ISS negative regulation of lamellipodium assembly
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017154 IDA semaphorin receptor activity
GO:0019904 IPI protein domain specific binding
GO:0030336 IMP negative regulation of cell migration
GO:0034260 IMP negative regulation of GTPase activity
GO:0050918 IDA positive chemotaxis
GO:0051022 IEA Rho GDP-dissociation inhibitor binding
GO:0060326 IDA cell chemotaxis
GO:0071526 IDA semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002079 Plxnb3-006 protein_coding Mus_musculus 0 5048
ENSMUST00000149478 Plxnb3-001 retained_intron Mus_musculus 0 2811
ENSMUST00000146812 Plxnb3-002 retained_intron Mus_musculus 0 2132
ENSMUST00000147127 Plxnb3-003 retained_intron Mus_musculus 0 924
ENSMUST00000155096 Plxnb3-004 retained_intron Mus_musculus 0 852

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