C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002198 Sf3a1-003 ENSMUSG00000002129 10090 + 11:4160350-4182541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002198
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002198 8.878±4.60 23.515±1.56 10.594±2.16 17.106±8.19 12.534±8.75 13.622±6.63 6.325±0.62 9.378±1.35 6.953±3.62 14.804±2.60 3.093±0.32 24.274±8.08 11.510±5.97 8.395±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VN CIL_0003VN_0002 CGP 11:4141123-4182541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005684 ISS U2-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215793 SF3A1-001 protein_coding Homo_sapiens 0 3208
ENST00000338306 CCDC157-201 protein_coding Homo_sapiens 1e-30 139
ENST00000399824 CCDC157-002 protein_coding Homo_sapiens 9e-31 139
ENST00000405659 CCDC157-001 protein_coding Homo_sapiens 1e-30 139
ENST00000411423 SF3A1-004 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000444440 SF3A1-011 protein_coding Homo_sapiens 0 603
ENST00000447376 SF3A1-009 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000463818 SF3A1-003 retained_intron Homo_sapiens 0 553
ENST00000471037 SF3A1-006 retained_intron Homo_sapiens 0 448
ENST00000471342 SF3A1-005 retained_intron Homo_sapiens 0 612
ENST00000485618 SF3A1-008 retained_intron Homo_sapiens 0 734
ENST00000496189 SF3A1-002 retained_intron Homo_sapiens 0 259
ENST00000498259 SF3A1-007 retained_intron Homo_sapiens 0 440

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