C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX interacting (with transcription-activation domain) protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002291 Paxip1-201 ENSMUSG00000002221 10090 - 5:27740667-27791339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002291
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002291 1.218±0.31 4.457±1.14 0.956±0.30 1.686±0.48 3.065±1.26 2.290±0.81 1.885±0.84 3.670±1.02 2.083±0.87 3.153±1.30 1.119±0.62 4.893±2.92 2.327±1.15 6.443±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K5 CIL_0000K5_0003 CGP 5:27740667-27855086

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000416 IMP positive regulation of histone H3-K36 methylation
GO:0001570 IMP vasculogenesis
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0010212 IEA response to ionizing radiation
GO:0030330 IEA DNA damage response, signal transduction by p53 class mediator
GO:0031398 IMP positive regulation of protein ubiquitination
GO:0035066 IMP positive regulation of histone acetylation
GO:0035097 IDA histone methyltransferase complex
GO:0043542 IMP endothelial cell migration
GO:0045830 IMP positive regulation of isotype switching
GO:0051568 IEA histone H3-K4 methylation
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0060261 IMP positive regulation of transcription initiation from RNA polymerase II promoter
GO:0060612 IMP adipose tissue development
GO:0060717 IMP chorion development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000031130 paxip1-201 protein_coding Danio_rerio 0 353
ENSDART00000144672 paxip1-001 protein_coding Danio_rerio 0 353
ENST00000397192 PAXIP1-201 protein_coding Homo_sapiens 0 2876
ENST00000404141 PAXIP1-001 protein_coding Homo_sapiens 0 2883
ENST00000419436 PAXIP1-007 protein_coding Homo_sapiens 0 255
ENST00000457196 PAXIP1-006 nonsense_mediated_decay Homo_sapiens 0 2468
ENST00000464717 PAXIP1-005 retained_intron Homo_sapiens 0 878
ENST00000473219 PAXIP1-002 processed_transcript Homo_sapiens 0 2638
ENST00000475066 PAXIP1-003 retained_intron Homo_sapiens 0 1002
ENST00000485730 PAXIP1-009 retained_intron Homo_sapiens 0 276

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