C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000K5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005606-ENSDARG00000038869 CGP 7955 2:29617508-29653812
GeneTranscriptPositionBiotype
ENSDARG00000005606 (paxip1)
PAX interacting (with transcription-activation domain) protein 1 		ENSDART00000031130 (paxip1-201) 29617511-29638186 protein_coding
ENSDART00000144672 (paxip1-001) 29617508-29638235 protein_coding
ENSDARG00000038869 (htr5a)
5-hydroxytryptamine (serotonin) receptor 5A 		ENSDART00000110612 (htr5a-201) 29640509-29650893 protein_coding
ENSDART00000139604 (htr5a-001) 29640511-29653812 protein_coding
CIL_0000K5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157212-ENSG00000157219 CGP 9606 7:154943687-155085749
GeneTranscriptPositionBiotype
ENSG00000157212 (PAXIP1)
PAX interacting (with transcription-activation domain) protein 1 		ENST00000397192 (PAXIP1-201) 154943691-155002972 protein_coding
ENST00000404141 (PAXIP1-001) 154943687-155003084 protein_coding
ENST00000419436 (PAXIP1-007) 154976123-155002911 protein_coding
ENST00000457196 (PAXIP1-006) 154943687-155003084 nonsense_mediated_decay
ENST00000464717 (PAXIP1-005) 154943689-154965710 retained_intron
ENST00000473219 (PAXIP1-002) 154943784-155002100 processed_transcript
ENST00000475066 (PAXIP1-003) 154967320-154983744 retained_intron
ENST00000485730 (PAXIP1-009) 154961049-154962695 retained_intron
ENST00000494182 (PAXIP1-008) 154969049-154974623 processed_transcript
ENSG00000157219 (HTR5A)
5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled 		ENST00000287907 (HTR5A-001) 155070324-155085749 protein_coding
ENST00000486819 (HTR5A-002) 155077138-155084615 processed_transcript
ENSG00000214106 (PAXIP1OS)
PAXIP1 antisense RNA 2 		ENST00000397551 (PAXIP1OS-001) 154928517-154945398 antisense
ENST00000411526 (PAXIP1OS-004) 154928498-154946836 antisense
ENST00000449486 (PAXIP1OS-003) 154928528-154949908 antisense
ENSG00000220575 (HTR5AOS)
HTR5A antisense RNA 1 		ENST00000395731 (HTR5AOS-001) 155067067-155071557 antisense
ENST00000493904 (HTR5AOS-002) 155070427-155071557 antisense
ENSG00000272760 (RP11-5C23.1)
 ENST00000608064 (RP11-5C23.1-001) 154951226-154952188 antisense
ENSG00000273183 (RP11-5C23.2)
 ENST00000609134 (RP11-5C23.2-001) 154956429-154957107 antisense
ENSG00000273344 (PAXIP1-AS1)
PAXIP1 antisense RNA 1 (head to head) 		ENST00000608317 (PAXIP1-AS1-001) 155003448-155005703 lincRNA
CIL_0000K5_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002221-ENSMUSG00000039106 CGP 10090 5:27740667-27855086
GeneTranscriptPositionBiotype
ENSMUSG00000002221 (Paxip1)
PAX interacting (with transcription-activation domain) protein 1 		ENSMUST00000002291 (Paxip1-201) 27740667-27791339 protein_coding
ENSMUSG00000039106 (Htr5a)
5-hydroxytryptamine (serotonin) receptor 5A 		ENSMUST00000036227 (Htr5a-201) 27841947-27855086 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000K5_0001ENSDARG00000005606ENSDART00000031130ENSDART00000144672ENSDARG00000038869ENSDART00000110612ENSDART00000139604CIL_0000K5_0002ENSG00000157212ENST00000397192ENST00000404141ENST00000419436ENST00000457196ENST00000464717ENST00000473219ENST00000475066ENST00000485730ENST00000494182ENSG00000157219ENST00000287907ENST00000486819ENSG00000214106ENST00000397551ENST00000411526ENST00000449486ENSG00000220575ENST00000395731ENST00000493904ENSG00000272760ENST00000608064ENSG00000273183ENST00000609134ENSG00000273344ENST00000608317CIL_0000K5_0003ENSMUSG00000002221ENSMUST00000002291ENSMUSG00000039106ENSMUST00000036227
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000K5_0001ENSDARG00000005606ENSDART00000031130ENSDART00000144672ENSDARG00000038869ENSDART00000110612ENSDART00000139604CIL_0000K5_0002ENSG00000157212ENST00000397192ENST00000404141ENST00000419436ENST00000457196ENST00000464717ENST00000473219ENST00000475066ENSG00000157219ENST00000287907ENSG00000214106ENST00000397551ENST00000411526ENST00000449486ENSG00000220575ENST00000395731ENSG00000272760ENST00000608064ENSG00000273183ENST00000609134ENSG00000273344ENST00000608317CIL_0000K5_0003ENSMUSG00000002221ENSMUST00000002291ENSMUSG00000039106ENSMUST00000036227
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005606 ENSDART00000031130 N/A N/A N/A 3.533±0.00 N/A N/A 0.689±0.04 1.932±0.67 0.587±0.00 N/A 1.276±0.00 N/A N/A N/A
ENSDART00000144672 N/A N/A N/A 2.621±1.95 N/A N/A 2.558±0.00 4.366±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000038869 ENSDART00000110612 N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139604 N/A N/A N/A 0.543±0.00 N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157212 ENST00000397192 1.996±0.00 2.312±0.00 0.432±0.00 0.990±0.31 1.360±0.00 1.080±0.08 0.892±0.72 1.699±0.00 0.980±0.52 0.868±0.00 N/A 3.288±1.11 2.520±0.33 5.579±0.38
ENST00000404141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.669±0.00 N/A 0.615±0.00 N/A
ENST00000419436 N/A N/A 3.369±0.00 N/A N/A N/A N/A N/A N/A N/A 2.269±0.00 N/A N/A 8.367±0.00
ENST00000457196 N/A N/A N/A N/A 0.607±0.00 N/A N/A N/A 0.409±0.00 N/A 0.734±0.00 N/A N/A 1.674±0.00
ENST00000464717 N/A N/A N/A N/A N/A 0.344±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473219 N/A 0.559±0.00 0.308±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.742±0.20 N/A N/A
ENST00000475066 N/A N/A N/A N/A 0.903±0.00 N/A 0.219±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000485730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157219 ENST00000287907 N/A N/A N/A 4.739±0.92 N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.239±0.00
ENST00000486819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214106 ENST00000397551 N/A N/A N/A N/A 1.547±0.00 N/A N/A N/A N/A 1.056±0.00 N/A N/A N/A N/A
ENST00000411526 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.00 0.515±0.00 N/A N/A N/A
ENST00000449486 N/A N/A N/A N/A N/A 1.376±0.00 N/A N/A N/A 0.897±0.00 N/A N/A 1.014±0.13 N/A
ENSG00000220575 ENST00000395731 N/A 0.026±0.00 N/A 3.161±0.32 0.012±0.00 0.015±0.00 0.008±0.00 N/A N/A N/A 0.004±0.00 0.007±0.00 N/A N/A
ENST00000493904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272760 ENST00000608064 N/A N/A 1.429±0.00 0.748±0.00 1.355±0.00 1.016±0.23 0.118±0.00 N/A 0.930±0.16 1.198±0.23 N/A 0.649±0.28 0.980±0.18 0.474±0.00
ENSG00000273183 ENST00000609134 0.062±0.00 0.509±0.00 0.568±0.00 0.407±0.00 0.339±0.10 0.263±0.05 0.098±0.04 0.596±0.18 1.197±1.01 0.287±0.05 N/A 1.254±0.60 0.146±0.00 0.401±0.25
ENSG00000273344 ENST00000608317 1.891±0.00 2.135±0.00 0.351±0.00 2.335±1.18 1.071±0.76 0.986±0.29 0.630±0.43 1.489±0.93 0.637±0.41 1.019±0.86 0.772±0.47 1.748±1.05 1.058±0.23 2.643±0.99
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002221 ENSMUST00000002291 1.218±0.31 4.457±1.14 0.956±0.30 1.686±0.48 3.065±1.26 2.290±0.81 1.885±0.84 3.670±1.02 2.083±0.87 3.153±1.30 1.119±0.62 4.893±2.92 2.327±1.15 6.443±1.57
ENSMUSG00000039106 ENSMUST00000036227 N/A 0.022±0.01 0.001±0.00 0.806±0.20 N/A 0.013±0.00 N/A 0.005±0.00 0.004±0.00 N/A N/A 0.134±0.07 0.003±0.00 0.009±0.00

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