C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX interacting (with transcription-activation domain) protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404141 PAXIP1-001 ENSG00000157212 9606 - 7:154943687-155003084 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MusclePlacentaENST00000404141
Transcript ID Muscle Placenta
ENST00000404141 0.669±0.00 0.615±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K5 CIL_0000K5_0002 CGP 7:154943687-155085749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000416 ISS positive regulation of histone H3-K36 methylation
GO:0001570 IEA vasculogenesis
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0010212 IDA response to ionizing radiation
GO:0030330 IMP DNA damage response, signal transduction by p53 class mediator
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0035066 ISS positive regulation of histone acetylation
GO:0035097 IDA histone methyltransferase complex
GO:0043542 IEA endothelial cell migration
GO:0045830 ISS positive regulation of isotype switching
GO:0051568 IDA histone H3-K4 methylation
GO:0051571 ISS positive regulation of histone H3-K4 methylation
GO:0060261 ISS positive regulation of transcription initiation from RNA polymerase II promoter
GO:0060612 IEA adipose tissue development
GO:0060717 IEA chorion development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002291 Paxip1-201 protein_coding Mus_musculus 0 2883
ENSDART00000144672 paxip1-001 protein_coding Danio_rerio 0 425
ENSDART00000031130 paxip1-201 protein_coding Danio_rerio 0 420

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