C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002837 Tmed5-001 ENSMUSG00000063406 10090 - 5:108121627-108132620 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000002837
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000002837 10.330±3.05 11.692±0.00 7.985±1.24 4.228±1.40 12.006±5.08 5.505±1.45 3.343±0.80 3.997±0.72 8.540±1.10 7.611±1.42 5.095±0.22 7.325±1.22 10.097±2.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZP CIL_0005ZP_0002 CGP 5:107908053-108109004
CIL_0005ZQ CIL_0005ZQ_0002 CGP 5:108065674-108132620
CIL_0005ZV CIL_0005ZV_0002 CGP 5:108106366-108232947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 ISS cis-Golgi network
GO:0006810 IEA transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0070971 ISS endoplasmic reticulum exit site
GO:0090161 ISS Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370280 TMED5-004 protein_coding Homo_sapiens 0 532
ENST00000370282 TMED5-001 protein_coding Homo_sapiens 0 915
ENST00000370290 TMED5-002 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000479918 TMED5-005 protein_coding Homo_sapiens 0 534
ENST00000483033 TMED5-003 processed_transcript Homo_sapiens 0 728

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