C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370290 TMED5-002 ENSG00000117500 9606 - 1:93151858-93180516 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370290 10.839±0.00 5.127±0.00 6.156±0.00 8.704±4.44 10.368±4.06 9.179±2.42 5.724±3.53 15.843±8.28 11.153±5.83 9.745±2.26 9.976±6.62 5.382±1.05 7.666±2.32 9.461±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZQ CIL_0005ZQ_0001 CGP 1:93079235-93180728
CIL_0005ZV CIL_0005ZV_0001 CGP 1:93149742-93278730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002837 Tmed5-001 protein_coding Mus_musculus 0 593
ENSMUST00000119437 Tmed5-004 protein_coding Mus_musculus 0 388
ENSMUST00000119784 Tmed5-006 protein_coding Mus_musculus 0 327
ENSMUST00000117759 Tmed5-005 protein_coding Mus_musculus 0 326
ENSMUST00000061203 Tmed5-002 protein_coding Mus_musculus 0 326
ENSMUST00000118036 Tmed5-003 protein_coding Mus_musculus 0 324

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