C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289382 CNOT11-001 ENSG00000158435 9606 + 2:101252802-101270316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289382 9.067±0.00 14.697±0.00 3.598±0.00 4.996±1.43 7.271±1.83 10.965±2.23 7.939±4.39 11.143±6.99 8.145±1.42 6.300±2.05 7.244±2.21 31.729±15.83 25.494±3.53 21.884±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0001 VISTA 2:100809636-101413030
CIL_0004HF CIL_0004HF_0001 CGP 2:101001715-101252866
CIL_0004HG CIL_0004HG_0001 CGP 2:101007617-101270316
CIL_0004HD CIL_0004HD_0001 CGP 2:101252802-101308701

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008283 NAS cell proliferation
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161515 Cnot11-001 protein_coding Mus_musculus 0 2128
ENSMUST00000003219 Cnot11-201 protein_coding Mus_musculus 0 2056
ENSMUST00000160145 Cnot11-002 processed_transcript Mus_musculus 0 1164

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