C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000110171 elavl4-001 ENSDARG00000045639 7955 + 8:16544954-16632414 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000110171
Transcript ID Brain Heart Kidney Liver
ENSDART00000110171 46.920±0.00 0.450±0.22 0.338±0.09 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000631 CIL_000631_0001 CGP 8:16019736-16632414
CIL_00063G CIL_00063G_0001 CGP 8:16523554-16778463

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0019012 IEA virion
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003501 Elavl3-201 protein_coding Mus_musculus 0 496
ENSMUST00000102722 Elavl4-005 protein_coding Mus_musculus 0 974
ENSMUST00000102723 Elavl4-002 protein_coding Mus_musculus 0 643
ENSMUST00000106597 Elavl4-004 protein_coding Mus_musculus 0 649
ENSMUST00000106598 Elavl4-003 protein_coding Mus_musculus 0 968
ENSMUST00000106600 Elavl4-006 protein_coding Mus_musculus 0 968
ENSMUST00000106601 Elavl4-007 protein_coding Mus_musculus 0 965
ENSMUST00000106603 Elavl4-001 protein_coding Mus_musculus 0 575
ENSMUST00000153200 Elavl4-009 processed_transcript Mus_musculus 0 641
ENST00000351593 ELAVL1-201 protein_coding Homo_sapiens 0 198
ENST00000357083 ELAVL4-002 protein_coding Homo_sapiens 0 935
ENST00000359227 ELAVL3-001 protein_coding Homo_sapiens 0 484
ENST00000371819 ELAVL4-006 protein_coding Homo_sapiens 0 941
ENST00000371821 ELAVL4-005 protein_coding Homo_sapiens 0 638
ENST00000371823 ELAVL4-004 protein_coding Homo_sapiens 0 632
ENST00000371824 ELAVL4-003 protein_coding Homo_sapiens 0 935
ENST00000371827 ELAVL4-001 protein_coding Homo_sapiens 0 931
ENST00000407627 ELAVL1-001 protein_coding Homo_sapiens 0 198
ENST00000438662 ELAVL3-002 protein_coding Homo_sapiens 0 673
ENST00000448907 ELAVL4-201 protein_coding Homo_sapiens 0 931
ENST00000474675 ELAVL4-009 processed_transcript Homo_sapiens 0 436
ENST00000585656 CTC-398G3.6-001 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000588853 ELAVL3-005 protein_coding Homo_sapiens 5.99994e-41 171
ENST00000596459 ELAVL1-002 protein_coding Homo_sapiens 0 198

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