C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003620 Prodh-002 ENSMUSG00000003526 10090 - 16:18071726-18089292 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003620
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003620 8.971±2.56 13.107±4.81 8.536±0.34 3.644±0.00 9.210±4.32 4.702±0.86 8.922±0.55 69.410±12.85 30.478±28.85 9.455±0.63 3.670±0.93 6.826±4.27 3.127±1.78 0.587±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0005EQ CIL_0005EQ_0003 CGP 16:18052860-18090203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004657 ISS proline dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006562 IEA proline catabolic process
GO:0010133 IEA proline catabolic process to glutamate
GO:0016597 IEA amino acid binding
GO:0055114 IEA oxidation-reduction process
GO:0071949 ISS FAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313755 PRODH-007 retained_intron Homo_sapiens 0 845
ENST00000334029 PRODH-002 protein_coding Homo_sapiens 0 1493
ENST00000357068 PRODH-001 protein_coding Homo_sapiens 0 1626
ENST00000399694 PRODH-012 retained_intron Homo_sapiens 0 274
ENST00000420436 PRODH-004 protein_coding Homo_sapiens 0 1487
ENST00000429300 PRODH-006 retained_intron Homo_sapiens 0 732
ENST00000438924 PRODH-011 protein_coding Homo_sapiens 0 263
ENST00000438948 XXbac-B444P24.10-001 unprocessed_pseudogene Homo_sapiens 0 876
ENST00000450579 PRODH-010 protein_coding Homo_sapiens 0 460
ENST00000457083 PRODH-009 protein_coding Homo_sapiens 2e-32 143
ENST00000482858 PRODH-005 retained_intron Homo_sapiens 0 845
ENST00000483718 DGCR6-004 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000491604 PRODH-003 retained_intron Homo_sapiens 0 926
ENST00000496625 PRODH-013 retained_intron Homo_sapiens 0 259
ENST00000609229 PRODH-014 retained_intron Homo_sapiens 0 468
ENST00000610940 PRODH-201 protein_coding Homo_sapiens 0 1626
ENST00000615165 PRODH-202 protein_coding Homo_sapiens 0 1498
ENST00000621424 PRODH-203 protein_coding Homo_sapiens 0 1631

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