C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thrombospondin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457183 THBS3-009 ENSG00000169231 9606 - 1:155195666-155207917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyTestisENST00000457183
Transcript ID Adipose Breast Colon Kidney Testis
ENST00000457183 1.918±0.00 5.614±0.00 3.089±0.00 2.663±0.00 4.281±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LQ CIL_0000LQ_0003 CGP 1:155195588-155213824

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA:NAS calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA:TAS extracellular region
GO:0007155 IEA cell adhesion
GO:0007160 NAS cell-matrix adhesion
GO:0008201 IEA:IDA heparin binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029682 Thbs3-001 protein_coding Mus_musculus 0 2996
ENSMUST00000119084 Thbs3-003 protein_coding Mus_musculus 0 1947
ENSMUST00000126315 Thbs3-002 retained_intron Mus_musculus 0 1419
ENSMUST00000144980 Thbs3-006 retained_intron Mus_musculus 0 734
ENSMUST00000136881 Thbs3-007 nonsense_mediated_decay Mus_musculus 0 726
ENSMUST00000126372 Thbs3-009 retained_intron Mus_musculus 0 520
ENSMUST00000155924 Thbs3-008 retained_intron Mus_musculus 0 472
ENSMUST00000003659 Comp-201 protein_coding Mus_musculus 0 451
ENSMUST00000153129 Thbs3-010 retained_intron Mus_musculus 0 394

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