C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thrombospondin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368378 THBS3-001 ENSG00000169231 9606 - 1:155195588-155207897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000368378
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000368378 2.596±0.00 7.841±0.00 7.532±0.00 2.469±1.76 2.844±0.00 1.313±0.00 6.222±0.00 9.084±5.29 4.298±0.97 8.341±2.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LQ CIL_0000LQ_0003 CGP 1:155195588-155213824

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003417 IEA growth plate cartilage development
GO:0005509 IEA:NAS calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA:TAS extracellular region
GO:0007155 IEA cell adhesion
GO:0007160 NAS cell-matrix adhesion
GO:0008201 IEA:IDA heparin binding
GO:0043931 IEA ossification involved in bone maturation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0060346 IEA bone trabecula formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029682 Thbs3-001 protein_coding Mus_musculus 0 3908
ENSMUST00000119084 Thbs3-003 protein_coding Mus_musculus 0 1982
ENSMUST00000126315 Thbs3-002 retained_intron Mus_musculus 0 1879
ENSMUST00000144980 Thbs3-006 retained_intron Mus_musculus 0 734
ENSMUST00000136881 Thbs3-007 nonsense_mediated_decay Mus_musculus 0 726
ENSMUST00000126372 Thbs3-009 retained_intron Mus_musculus 0 520
ENSMUST00000155924 Thbs3-008 retained_intron Mus_musculus 0 472
ENSMUST00000003659 Comp-201 protein_coding Mus_musculus 0 451
ENSMUST00000153129 Thbs3-010 retained_intron Mus_musculus 0 409

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