C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003946 Nob1-001 ENSMUSG00000003848 10090 - 8:107412489-107425049 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003946 11.544±4.60 7.656±1.06 12.641±2.50 14.740±6.39 6.932±1.58 7.075±1.75 7.614±0.45 9.530±0.64 10.905±7.74 6.143±0.97 9.628±0.44 20.594±4.66 15.227±6.42 4.804±2.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_00090U CIL_00090U_0002 VISTA 8:107303123-107903792
CIL_0004I2 CIL_0004I2_0002 CGP 8:107388225-107425051
CIL_0001NB CIL_0001NB_0002 CGP 8:107412486-107558594

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISA nucleus
GO:0005730 ISA nucleolus
GO:0005737 ISA cytoplasm
GO:0007601 IMP visual perception
GO:0030490 ISA maturation of SSU-rRNA
GO:0042274 ISA ribosomal small subunit biogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268802 NOB1-001 protein_coding Homo_sapiens 0 1247
ENST00000502915 RP11-173E2.1-001 processed_pseudogene Homo_sapiens 0 1142
ENST00000564620 NOB1-006 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000569871 NOB1-003 nonsense_mediated_decay Homo_sapiens 0 313

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