C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003848 Nob1 10090 - 8:107412486-107425051 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003946 Nob1-001 107412489-107425049 protein_coding
  ENSMUST00000076585 Nob1-007 107418056-107422327 processed_transcript
  ENSMUST00000109273 Nob1-008 107418154-107418666 retained_intron
  ENSMUST00000163757 Nob1-006 107416238-107424986 retained_intron
  ENSMUST00000163973 Nob1-003 107417695-107425051 retained_intron
  ENSMUST00000165266 Nob1-005 107418350-107425026 nonsense_mediated_decay
  ENSMUST00000169311 Nob1-002 107412486-107425041 nonsense_mediated_decay
  ENSMUST00000170796 Nob1-004 107412486-107421562 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003946ENSMUST00000076585ENSMUST00000163757ENSMUST00000170796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003946 11.544±4.60 7.656±1.06 12.641±2.50 14.740±6.39 6.932±1.58 7.075±1.75 7.614±0.45 9.530±0.64 10.905±7.74 6.143±0.97 9.628±0.44 20.594±4.66 15.227±6.42 4.804±2.08
ENSMUST00000076585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.654±0.00
ENSMUST00000163757 N/A 3.684±0.00 N/A 4.824±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.967±0.00 N/A
ENSMUST00000170796 0.990±0.00 4.289±0.13 4.977±1.12 8.004±2.81 3.338±0.35 3.146±0.00 1.516±0.43 1.672±0.16 3.007±1.92 N/A 1.517±0.27 4.501±1.20 3.926±1.70 1.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_00090U CIL_00090U_0002 VISTA 8:107303123-107903792
CIL_0004I2 CIL_0004I2_0002 CGP 8:107388225-107425051
CIL_0001NB CIL_0001NB_0002 CGP 8:107412486-107558594

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISA nucleus
GO:0005730 ISA nucleolus
GO:0005737 ISA cytoplasm
GO:0007601 IMP visual perception
GO:0030490 ISA maturation of SSU-rRNA
GO:0042274 ISA ribosomal small subunit biogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016080 nob1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000141101 NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) protein_coding Homo_sapiens

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