C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidylcholine acyltransferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004381 Lpcat3-001 ENSMUSG00000004270 10090 + 6:124663027-124704418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004381 59.061±9.68 59.361±8.69 32.286±3.27 9.235±5.32 42.447±9.09 49.808±10.05 18.090±1.88 85.062±15.47 56.473±15.40 41.113±0.87 8.239±0.69 54.323±17.21 48.679±34.42 104.134±49.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0008654 IEA phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0047184 IEA 1-acylglycerophosphocholine O-acyltransferase activity
GO:0097006 IMP regulation of plasma lipoprotein particle levels

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261407 LPCAT3-001 protein_coding Homo_sapiens 0 1888
ENST00000535021 LPCAT3-011 processed_transcript Homo_sapiens 0 556
ENST00000535479 LPCAT3-003 nonsense_mediated_decay Homo_sapiens 0 1258
ENST00000536797 LPCAT3-004 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000536971 LPCAT3-009 processed_transcript Homo_sapiens 6e-23 111
ENST00000537179 LPCAT3-007 retained_intron Homo_sapiens 0 309
ENST00000538910 LPCAT3-008 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000540060 LPCAT3-010 processed_transcript Homo_sapiens 0 313
ENST00000540090 LPCAT3-006 nonsense_mediated_decay Homo_sapiens 0 948
ENST00000543794 LPCAT3-005 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000545459 LPCAT3-013 processed_transcript Homo_sapiens 0 276
ENST00000599672 EMG1-001 protein_coding Homo_sapiens 0 342
ENST00000620843 LPCAT3-014 processed_transcript Homo_sapiens 0 246
ENST00000622221 RP1-66H9.1-001 unprocessed_pseudogene Homo_sapiens 0 233

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