C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor, erythroid derived 2, like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005103 Nfe2l3-001 ENSMUSG00000029832 10090 + 6:51432670-51458768 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005103 1.494±1.00 0.117±0.06 19.620±3.95 2.703±1.13 1.251±0.57 0.855±0.28 0.133±0.06 0.430±0.16 0.180±0.15 1.323±0.36 0.086±0.03 0.643±0.31 0.791±0.64 0.524±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CP CIL_0002CP_0002 CGP 6:51432670-51469894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000056233 NFE2L3-001 protein_coding Homo_sapiens 0 1164
ENST00000566331 RP11-480G7.2-001 processed_pseudogene Homo_sapiens 0 486
ENST00000588207 NFE2L3P1-001 processed_pseudogene Homo_sapiens 0 1026
ENST00000606261 NFE2L3-002 retained_intron Homo_sapiens 0 841

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