C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005365 Spc25-001 ENSMUSG00000005233 10090 - 2:69193895-69206194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000005365
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000005365 0.459±0.21 0.891±0.19 8.921±3.76 0.162±0.00 0.444±0.26 0.145±0.00 2.175±0.77 20.166±22.43 0.160±0.07 2.081±0.68 17.054±11.81 3.226±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0002 VISTA 2:69119794-69721610
CIL_000639 CIL_000639_0002 CGP 2:69135800-69206194
CIL_00063A CIL_00063A_0002 CGP 2:69193895-69227841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000777 ISS condensed chromosome kinetochore
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0007052 ISS mitotic spindle organization
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0031262 ISS Ndc80 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282074 SPC25-001 protein_coding Homo_sapiens 0 555
ENST00000479309 SPC25-002 processed_transcript Homo_sapiens 0 366
ENST00000611144 SPC25-001 protein_coding Homo_sapiens 0 545
ENST00000612084 SPC25-002 processed_transcript Homo_sapiens 0 366
ENST00000616584 SPC25-201 protein_coding Homo_sapiens 0 555

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