C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPC25, NDC80 kinetochore complex component
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282074 SPC25-001 ENSG00000152253 9606 - 2:168870894-168890445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282074 0.115±0.00 0.321±0.00 0.108±0.00 0.300±0.00 0.741±0.01 0.245±0.01 0.081±0.00 0.130±0.00 0.052±0.02 0.243±0.12 0.014±0.00 6.092±6.06 2.302±1.05 2.687±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063C CIL_00063C_0001 CGP 2:168455862-168865514
CIL_000639 CIL_000639_0001 CGP 2:168786539-168913371
CIL_0008HC CIL_0008HC_0001 VISTA 2:168815051-169417863
CIL_00063A CIL_00063A_0001 CGP 2:168834132-168913371

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000777 IDA condensed chromosome kinetochore
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0007052 IMP mitotic spindle organization
GO:0007059 IMP chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0031262 IDA Ndc80 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005365 Spc25-001 protein_coding Mus_musculus 0 555
ENSMUST00000112320 Spc25-003 protein_coding Mus_musculus 0 555
ENSMUST00000167875 Spc25-201 protein_coding Mus_musculus 0 505
ENSMUST00000127243 Spc25-002 protein_coding Mus_musculus 0 505
ENSMUST00000149045 Spc25-008 protein_coding Mus_musculus 0 359

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