C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005490 Slc1a6-201 ENSMUSG00000005357 10090 + 10:78780496-78814825 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005490 0.248±0.17 0.203±0.14 0.349±0.00 5.512±1.03 0.078±0.04 0.226±0.07 0.047±0.03 0.075±0.03 0.096±0.07 0.189±0.05 0.040±0.02 2.184±0.92 0.410±0.18 0.225±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005313 IMP L-glutamate transmembrane transporter activity
GO:0005794 IDA Golgi apparatus
GO:0015813 IMP L-glutamate transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0042391 IMP regulation of membrane potential
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221742 SLC1A6-002 protein_coding Homo_sapiens 0 1975
ENST00000265113 SLC1A3-001 protein_coding Homo_sapiens 0 409
ENST00000430939 SLC1A6-001 protein_coding Homo_sapiens 0 1404
ENST00000506178 SLC1A3-017 retained_intron Homo_sapiens 0 250
ENST00000544886 SLC1A6-004 protein_coding Homo_sapiens 0 1192
ENST00000595863 SLC1A6-008 protein_coding Homo_sapiens 0 357
ENST00000596697 SLC1A6-006 retained_intron Homo_sapiens 0 712
ENST00000597262 SLC1A6-011 protein_coding Homo_sapiens 0 641
ENST00000598504 SLC1A6-003 protein_coding Homo_sapiens 0 1107
ENST00000599636 SLC1A6-007 protein_coding Homo_sapiens 0 488
ENST00000600144 SLC1A6-005 protein_coding Homo_sapiens 0 1103
ENST00000601761 SLC1A6-010 protein_coding Homo_sapiens 0 198
ENST00000612708 SLC1A3-202 protein_coding Homo_sapiens 0 381
ENST00000613445 SLC1A3-203 protein_coding Homo_sapiens 0 409

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