C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (glial high affinity glutamate transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265113 SLC1A3-001 ENSG00000079215 9606 + 5:36606355-36688334 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMuscleOvaryPlacentaENST00000265113
Transcript ID Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENST00000265113 49.267±15.00 2.372±0.18 3.082±0.74 0.934±0.00 2.459±0.00 1.256±0.05 1.204±0.45 3.417±0.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001504 TAS neurotransmitter uptake
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005314 IEA high-affinity glutamate transmembrane transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006536 IEA glutamate metabolic process
GO:0006537 IEA glutamate biosynthetic process
GO:0006811 TAS ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0007268 TAS synaptic transmission
GO:0007605 IEA sensory perception of sound
GO:0009416 IEA response to light stimulus
GO:0009449 IEA gamma-aminobutyric acid biosynthetic process
GO:0009611 IEA response to wounding
GO:0009986 IEA cell surface
GO:0015813 IEA L-glutamate transport
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016595 IEA glutamate binding
GO:0016597 IEA amino acid binding
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0021545 IEA cranial nerve development
GO:0031223 IEA auditory behavior
GO:0042493 IEA response to drug
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0043205 IEA fibril
GO:0046677 IEA response to antibiotic
GO:0048667 IEA cell morphogenesis involved in neuron differentiation
GO:0050806 IEA positive regulation of synaptic transmission
GO:0050885 IEA neuromuscular process controlling balance
GO:0051938 IDA L-glutamate import
GO:0055085 TAS transmembrane transport
GO:0070779 IDA D-aspartate import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005493 Slc1a3-001 protein_coding Mus_musculus 0 2327
ENSMUST00000125997 Slc1a3-006 retained_intron Mus_musculus 0 1426
ENSMUST00000128879 Slc1a3-008 retained_intron Mus_musculus 0 462
ENSMUST00000129325 Slc1a3-007 retained_intron Mus_musculus 0 459
ENSMUST00000157065 Slc1a3-004 protein_coding Mus_musculus 0 411
ENSMUST00000153455 Slc1a3-003 processed_transcript Mus_musculus 0 411
ENSMUST00000005490 Slc1a6-201 protein_coding Mus_musculus 0 409

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