C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006625 Rbm14-001 ENSMUSG00000006456 10090 - 19:4800569-4811634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006625 12.811±3.36 42.656±8.70 11.541±4.74 50.964±12.43 25.046±15.80 28.198±12.63 6.031±2.10 12.975±3.13 17.564±11.77 22.316±6.96 1.366±0.43 62.236±17.95 12.295±4.29 16.383±6.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0006 CGP 19:4742913-4811612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 ISS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0016575 ISS histone deacetylation
GO:0030374 ISS ligand-dependent nuclear receptor transcription coactivator activity
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310137 RBM14-001 protein_coding Homo_sapiens 0 3871
ENST00000393979 RBM14-002 protein_coding Homo_sapiens 0 1057
ENST00000409372 RBM14-003 protein_coding Homo_sapiens 0 632
ENST00000409738 RBM14-014 protein_coding Homo_sapiens 0 475
ENST00000412278 RBM14-RBM4-004 protein_coding Homo_sapiens 0 582
ENST00000421355 RBM14-RBM4-003 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000443702 RBM14-004 protein_coding Homo_sapiens 0 551
ENST00000461478 RBM14-006 processed_transcript Homo_sapiens 0 488
ENST00000500635 RBM14-RBM4-002 protein_coding Homo_sapiens 0 518
ENST00000511114 RBM14-RBM4-005 processed_transcript Homo_sapiens 0 575
ENST00000512283 RBM14-013 processed_transcript Homo_sapiens 0 575

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